Function reference • envClean

All functions

add_cover(): Generate best guess of cover for each taxa*context

add_height(): Generate best guess of height for each taxa*context

add_lifeform(): Generate best guess of lifeform for each taxa*context

aoi: Simple feature to define a geographic area of interest.

bin_taxa(): Add taxa column

cleaning_summary(): Describte change in taxa, records, visits and sites between cleaning steps

cleaning_text(): Write a sentence describing change in taxa, records, visits and sites between two cleaning steps

filter_counts(): Filter any context with less instances than a threshold value

filter_geo_range(): Filter a dataframe with e/n or lat/long to an area of interest polygon (sf)

filter_prop(): Filter taxa recorded at less than x percent of visits

filter_taxa(): Clean/Tidy to one row per taxa*Visit

filter_text_col(): Filter a dataframe column on character string(s)

find_outliers(): Find local outliers

find_taxa(): Find how taxa changed through the cleaning/filtering/tidying process

flor_all: Example of data combined from several data sources.

get_taxonomy(): Get GBIF backbone taxonomy

luclean: Dataframe of cleaning steps

lurank: Dataframe of taxonomic ranks

make_attribute(): Title

make_con_status(): Make conservation status from existing status codes

make_cover(): Make a single (numeric, proportion) cover column from different sorts of input cover

make_effort_mod(): Distribution of credible values for taxa richness.

make_effort_mod_pca(): Model the effect of principal components axes on taxa richness.

make_env_pca(): Principal components analysis and various outputs from environmental data

make_gbif_taxonomy(): Make taxonomy lookups

make_ind_status(): Make indigenous status lookup

make_lifeform(): Get unique lifeform across taxa, perhaps including further context

make_taxonomy(): Get taxonomy via galah::taxa_search()

rec_vis_sit_tax(): How many records, visits, sites and taxa in a dataframe

reduce_geo_rel(): Reduce data frame to a single spatial reliability within a context

taxonomy_overrides: Manual taxonomic overrides