All functions

add_cover()

Generate best guess of cover for each taxa*context

add_height()

Generate best guess of height for each taxa*context

add_lifeform()

Generate best guess of lifeform for each taxa*context

aoi

Simple feature to define a geographic area of interest.

bin_taxa()

Add taxa column

cleaning_summary()

Describte change in taxa, records, visits and sites between cleaning steps

cleaning_text()

Write a sentence describing change in taxa, records, visits and sites between two cleaning steps

filter_counts()

Filter any context with less instances than a threshold value

filter_geo_range()

Filter a dataframe with e/n or lat/long to an area of interest polygon (sf)

filter_prop()

Filter taxa recorded at less than x percent of visits

filter_taxa()

Clean/Tidy to one row per taxa*Visit

filter_text_col()

Filter a dataframe column on character string(s)

find_outliers()

Find local outliers

find_taxa()

Find how taxa changed through the cleaning/filtering/tidying process

flor_all

Example of data combined from several data sources.

get_taxonomy()

Get GBIF backbone taxonomy

luclean

Dataframe of cleaning steps

lurank

Dataframe of taxonomic ranks

make_attribute()

Title

make_con_status()

Make conservation status from existing status codes

make_cover()

Make a single (numeric, proportion) cover column from different sorts of input cover

make_effort_mod()

Distribution of credible values for taxa richness.

make_effort_mod_pca()

Model the effect of principal components axes on taxa richness.

make_env_pca()

Principal components analysis and various outputs from environmental data

make_gbif_taxonomy()

Make taxonomy lookups

make_ind_status()

Make indigenous status lookup

make_lifeform()

Get unique lifeform across taxa, perhaps including further context

make_taxonomy()

Get taxonomy via galah::taxa_search()

rec_vis_sit_tax()

How many records, visits, sites and taxa in a dataframe

reduce_geo_rel()

Reduce data frame to a single spatial reliability within a context

taxonomy_overrides

Manual taxonomic overrides