Make a description for an ecosystem
make_eco_desc(
bio_df,
clust_df,
bio_wide = NULL,
bio_ind = NULL,
clust_col = "cluster",
context,
cov_col = "use_cover",
taxa_col = "taxa",
lustr,
taxonomy,
use_prop_thresh
)
Dataframe with biological information.
Dataframe with cluster membership and join columns to bio_df
.
Dataframe of taxa by sites.
Dataframe of indicator taxa per class. Output from
envCluster::make_ind_val_df
. Will be created if not supplied.
Character name of column in clust_df
that defines clusters.
Character name of columns in bio_df
that define the context.
Character name of column in bio_df
that contain numeric cover
values.
Character name of column with taxa.
Dataframe containing structural information.
Dataframe containing indigenous status of taxa in bio_df
Numeric. Threshold (proportion) for taxa to include in
description. Taxa that occur in more than use_prop_thresh
proportion of
sites in the cluster will be included in the description.